Well I don’t claim to be an expert on this but I did do quite a bit of reading and research regarding this topic a while back while working on a project involving bonding aluminum (7075) to some epoxy graphite tubes. What I would consider:
life span of your product: how long will it be in service?
what type of fiber: any potential for galvanic corrosion?
Environment: moisture, temp, UV, chemicals ect… This also plays into life span.
What type of anodizing? type II is primarily cosmetic, while type III has some definite advantages.
What I ended up doing was going with type III anodizing, not only to protect the aluminum, but also create a barrier against galvanic corrosion from the graphite fibers. I did however find out after while talking tech to my anodizing guy, that bonding to a type III surface with no dye is optimal. The dyes are usually organic based and penetrate the pores of the surface possibly degrading the bond. Those parts are still in use and have not had a single failure. I should add that I used a high temp structural epoxy. Just as bonding anything thing else clean clean clean is the name of the game. Hope I helped.