When I’ve brushed gel coat (I don’t have a gun either), I just figure out how much gel coat I need to mix based on the surface area of the mold to give me about 15 mils. I then mix it up in about 1/2 quart batches, catalyzing at the same rate, and brush it all at once. I’ve found that it works best to brush from the center to the edges, and to feather the beginning and end of the brush stroke. It is very hard to get it even though. I do get thin spots, but fortunately haven’t had the gel coat alligator on me yet.
Since you’re brushing clear gel coat, I’m sure this will be more difficult to see the thick/thin areas. I’ve only brushed white gel against an orange mold.